VimUnDo Bșo$'AdLxRU                                     `$    _                                                                                                                                                                                                                                                                                                                                                                                           `$                                 U    Optimization meeting 11/02/2021        /Brief round of introductions [All, 10 minutes]        2Carola Doerr: Project setting [Carola, 5 minutes]        *Systems biology group [Benno, 15 minutes]        Motivational examples        Data        Layers        *Iteration between experiment and modeling        0Genomics/transcriptomics/proteomics/metabolomic        Transcriptomics         HT sequencing         	Networks        7Cancer [15 minutes, Emile 5+, Farzaneh 5+, Benno 5–]        Ovarian cancer, resistance        Single cell technology        #ScRNA data and its particularities        >Personalized treatment recommendation [5+ minutes, Farzaneh]         Project starting now [Benno]        -PARIS: Signatures and drugs, advanced models        DECIDER: explainable AI        9Autoimmunity/Sjögren [15 minutes: Behnam 10, Cheïma 5]        	Biology         Autoimmunity [Behnam]        Biomedical questions        Stratification [Behnam]        Data        Milieu Intérieur [Behnam]        Autoimmune Map [Behnam]        Biology [5 minutes]        Sjögren [Cheïma]        Necessity          Overall pressentation [Cheïma]        SjS Data Warehouse [Cheïma]        'Cross-cohort gene Clustering [Cheïma]        6Optimization problems, 1–2 slides [~3 minutes each]        Monotonic regression [Benno]         Significant Signatures [Emile]        [Drug screening, Farzaneh?]        HTranscription factor (meta gene) detection in for gene modules [Behnam]        ,Identifying deregulated subnetworks [Benno]        Next steps        	Projects        Dates 5